IL_6WOO_216
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 6WOO|1|5|A|3180, 6WOO|1|5|A|3186, 6WOO|1|5|U|3207, 6WOO|1|5|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_216 not in the Motif Atlas
- Geometric match to IL_5TBW_124
- Geometric discrepancy: 0.1149
- The information below is about IL_5TBW_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6WOO|1|5|U|3179
6WOO|1|5|A|3180
6WOO|1|5|C|3181
6WOO|1|5|G|3182
6WOO|1|5|A|3183
6WOO|1|5|A|3184
6WOO|1|5|U|3185
6WOO|1|5|A|3186
6WOO|1|5|A|3187
6WOO|1|5|G|3188
*
6WOO|1|5|C|3204
6WOO|1|5|G|3205
6WOO|1|5|C|3206
6WOO|1|5|U|3207
6WOO|1|5|G|3208
6WOO|1|5|A|3209
6WOO|1|5|A|3210
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain E
- eL6
- Chain H
- uL6
- Chain M
- eL14
- Chain O
- uL13
- Chain S
- eL20
- Chain f
- eL33
Coloring options: