3D structure

PDB id
6WOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
ACCGAGUAG*CGAAACU
Length
16 nucleotides
Bulged bases
6WOO|1|7|C|73
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WOO_232 not in the Motif Atlas
Homologous match to IL_5TBW_377
Geometric discrepancy: 0.0801
The information below is about IL_5TBW_377
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.8
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

6WOO|1|7|A|72
6WOO|1|7|C|73
6WOO|1|7|C|74
6WOO|1|7|G|75
6WOO|1|7|A|76
6WOO|1|7|G|77
6WOO|1|7|U|78
6WOO|1|7|A|79
6WOO|1|7|G|80
*
6WOO|1|7|C|100
6WOO|1|7|G|101
6WOO|1|7|A|102
6WOO|1|7|A|103
6WOO|1|7|A|104
6WOO|1|7|C|105
6WOO|1|7|U|106

Current chains

Chain 7
5S ribosomal RNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain F
uL30
Chain I
uL16
Chain S
eL20
Chain T
eL21

Coloring options:


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