IL_6WOO_234
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_234 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0665
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
6WOO|1|8|A|44
6WOO|1|8|C|45
6WOO|1|8|G|46
6WOO|1|8|C|47
6WOO|1|8|A|48
6WOO|1|8|G|49
6WOO|1|8|C|50
6WOO|1|8|G|51
6WOO|1|8|A|52
6WOO|1|8|A|53
6WOO|1|8|A|54
6WOO|1|8|U|55
6WOO|1|8|G|56
6WOO|1|8|C|57
6WOO|1|8|G|58
6WOO|1|8|A|59
6WOO|1|8|U|60
6WOO|1|8|A|61
6WOO|1|8|C|62
6WOO|1|8|G|63
6WOO|1|8|U|64
*
6WOO|1|8|A|96
6WOO|1|8|A|97
6WOO|1|8|U|98
6WOO|1|8|C|99
6WOO|1|8|U|100
Current chains
- Chain 8
- 5.8S ribosomal rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- uL23
- Chain h
- uL29
- Chain j
- eL37
- Chain l
- eL39
Coloring options: