IL_6WOO_248

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUG*CGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_248 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.25

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6WOO|1|5|C|1069
6WOO|1|5|U|1070
6WOO|1|5|U|1071
6WOO|1|5|G|1072
*
6WOO|1|5|C|1086
6WOO|1|5|G|1087
6WOO|1|5|U|1088
6WOO|1|5|G|1089

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain T

eL21

Chain b

eL29