IL_6WOO_253

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGG*CCUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_253 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3876

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

6WOO|1|5|C|1965
6WOO|1|5|U|1966
6WOO|1|5|U|1967
6WOO|1|5|G|1968
6WOO|1|5|G|1969
*
6WOO|1|5|C|2062
6WOO|1|5|C|2063
6WOO|1|5|U|2064
6WOO|1|5|U|2065
6WOO|1|5|G|2066

Current chains

Chain 5

25S ribosomal RNA

Nearby chains