IL_6WOO_256
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_256 not in the Motif Atlas
- Homologous match to IL_8C3A_486
- Geometric discrepancy: 0.1271
- The information below is about IL_8C3A_486
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28976.1
- Basepair signature
- cWW-L-cWW-cSH-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6WOO|1|5|C|2889
6WOO|1|5|A|2890
6WOO|1|5|U|2891
6WOO|1|5|A|2892
*
6WOO|1|5|U|2909
6WOO|1|5|A|2910
6WOO|1|5|A|2911
6WOO|1|5|G|2912
6WOO|1|5|C|2913
6WOO|1|5|G|2914
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain B
- uL3
- Chain H
- uL6
- Chain O
- uL13
- Chain V
- uL14
- Chain m
- eL40
Coloring options: