3D structure

PDB id
6WQQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAGGUAG*CGAAUGC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WQQ_027 not in the Motif Atlas
Homologous match to IL_4WF9_031
Geometric discrepancy: 0.0908
The information below is about IL_4WF9_031
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6WQQ|1|1|G|901
6WQQ|1|1|A|902
6WQQ|1|1|G|903
6WQQ|1|1|G|904
6WQQ|1|1|U|905
6WQQ|1|1|A|906
6WQQ|1|1|G|907
*
6WQQ|1|1|C|960
6WQQ|1|1|G|961
6WQQ|1|1|A|962
6WQQ|1|1|A|963
6WQQ|1|1|U|964
6WQQ|1|1|G|965
6WQQ|1|1|C|966

Current chains

Chain 1
23S rRNA

Nearby chains

Chain 2
5S ribosomal RNA; 5S rRNA
Chain I
50S ribosomal protein L27
Chain M
50S ribosomal protein L30
Chain Y
50S ribosomal protein L16

Coloring options:


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