IL_6WQQ_067

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

6WQQ|1|1|A|1965, 6WQQ|1|1|U|1971, 6WQQ|1|1|C|1990

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQQ_067 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1219

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

6WQQ|1|1|C|1961
6WQQ|1|1|G|1962
6WQQ|1|1|A|1963
6WQQ|1|1|A|1964
6WQQ|1|1|A|1965
6WQQ|1|1|U|1966
6WQQ|1|1|U|1967
6WQQ|1|1|C|1968
6WQQ|1|1|C|1969
6WQQ|1|1|U|1970
6WQQ|1|1|U|1971
6WQQ|1|1|G|1972
*
6WQQ|1|1|C|1988
6WQQ|1|1|C|1989
6WQQ|1|1|C|1990
6WQQ|1|1|G|1991

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2