IL_6WQQ_075

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG*CAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQQ_075 not in the Motif Atlas

Homologous match to IL_4WF9_086

Geometric discrepancy: 0.1551

The information below is about IL_4WF9_086

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

6WQQ|1|1|C|2324
6WQQ|1|1|A|2325
6WQQ|1|1|G|2326
*
6WQQ|1|1|C|2344
6WQQ|1|1|A|2345
6WQQ|1|1|U|2346
6WQQ|1|1|A|2347
6WQQ|1|1|G|2348

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain a

50S ribosomal protein L18