3D structure

PDB id
6WQQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUGAG*CAAGAUGAG
Length
14 nucleotides
Bulged bases
6WQQ|1|1|G|2807
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WQQ_119 not in the Motif Atlas
Homologous match to IL_4WF9_099
Geometric discrepancy: 0.1092
The information below is about IL_4WF9_099
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.3
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

6WQQ|1|1|U|2663
6WQQ|1|1|U|2664
6WQQ|1|1|G|2665
6WQQ|1|1|A|2666
6WQQ|1|1|G|2667
*
6WQQ|1|1|C|2801
6WQQ|1|1|A|2802
6WQQ|1|1|A|2803
6WQQ|1|1|G|2804
6WQQ|1|1|A|2805
6WQQ|1|1|U|2806
6WQQ|1|1|G|2807
6WQQ|1|1|A|2808
6WQQ|1|1|G|2809

Current chains

Chain 1
23S rRNA

Nearby chains

Chain L
50S ribosomal protein L3
Chain V
50S ribosomal protein L13

Coloring options:


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