IL_6WRU_106

3D structure

PDB id

6WRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUAU*AUU

Length

7 nucleotides

Bulged bases

6WRU|1|1|U|1056

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WRU_106 not in the Motif Atlas

Geometric match to IL_7ECN_001

Geometric discrepancy: 0.15

The information below is about IL_7ECN_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6WRU|1|1|A|1055
6WRU|1|1|U|1056
6WRU|1|1|A|1057
6WRU|1|1|U|1058
*
6WRU|1|1|A|1192
6WRU|1|1|U|1193
6WRU|1|1|U|1194

Current chains

Chain 1

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L20

Chain V

50S ribosomal protein L13