IL_6X6T_171

3D structure

PDB id

6X6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6X6T|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6X6T_171 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0682

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6X6T|1|a|C|2636
6X6T|1|a|U|2637
6X6T|1|a|G|2638
6X6T|1|a|A|2639
6X6T|1|a|G|2640
*
6X6T|1|a|C|2774
6X6T|1|a|G|2775
6X6T|1|a|A|2776
6X6T|1|a|G|2777
6X6T|1|a|A|2778
6X6T|1|a|U|2779
6X6T|1|a|G|2780
6X6T|1|a|A|2781
6X6T|1|a|G|2782

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13