IL_6XA1_024

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

6XA1|1|L5|G|474, 6XA1|1|L5|U|475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_024 not in the Motif Atlas

Geometric match to IL_5WTK_001

Geometric discrepancy: 0.2036

The information below is about IL_5WTK_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6XA1|1|L5|G|473
6XA1|1|L5|G|474
6XA1|1|L5|U|475
6XA1|1|L5|C|476
*
6XA1|1|L5|G|662
6XA1|1|L5|C|663

Current chains

Chain L5

28S rRNA

Nearby chains