IL_6XA1_039

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUG*CGGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_039 not in the Motif Atlas

Geometric match to IL_2O3V_003

Geometric discrepancy: 0.3948

The information below is about IL_2O3V_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34618.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

6

Unit IDs

6XA1|1|L5|C|1086
6XA1|1|L5|U|1087
6XA1|1|L5|G|1155
*
6XA1|1|L5|C|1180
6XA1|1|L5|G|1181
6XA1|1|L5|G|1182
6XA1|1|L5|G|1183

Current chains

Chain L5

28S rRNA

Nearby chains