IL_6XA1_040

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_040 not in the Motif Atlas

Geometric match to IL_3W3S_003

Geometric discrepancy: 0.1089

The information below is about IL_3W3S_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

6XA1|1|L5|G|1160
6XA1|1|L5|G|1161
6XA1|1|L5|A|1162
*
6XA1|1|L5|U|1173
6XA1|1|L5|G|1174
6XA1|1|L5|C|1175

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5