IL_6XA1_061
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCGAA(PSU)G*CAAAC
- Length
- 12 nucleotides
- Bulged bases
- 6XA1|1|L5|G|1728
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XA1_061 not in the Motif Atlas
- Geometric match to IL_4V9F_035
- Geometric discrepancy: 0.2788
- The information below is about IL_4V9F_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38603.1
- Basepair signature
- cWW-cWS-L-R-L-R-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6XA1|1|L5|G|1726
6XA1|1|L5|C|1727
6XA1|1|L5|G|1728
6XA1|1|L5|A|1729
6XA1|1|L5|A|1730
6XA1|1|L5|PSU|1731
6XA1|1|L5|G|1732
*
6XA1|1|L5|C|1772
6XA1|1|L5|A|1773
6XA1|1|L5|A|1774
6XA1|1|L5|A|1775
6XA1|1|L5|C|1776
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LI
- 60S ribosomal protein L10-like
- Chain LT
- 60S ribosomal protein L21
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