IL_6XA1_071
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6XA1|1|L5|C|1922, 6XA1|1|L5|A|2028
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XA1_071 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1749
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6XA1|1|L5|G|1920
6XA1|1|L5|A|1921
6XA1|1|L5|C|1922
6XA1|1|L5|C|1923
6XA1|1|L5|C|1924
6XA1|1|L5|C|1925
6XA1|1|L5|A|1926
6XA1|1|L5|G|1927
6XA1|1|L5|A|1928
6XA1|1|L5|A|1929
6XA1|1|L5|A|1930
6XA1|1|L5|A|1931
*
6XA1|1|L5|U|2025
6XA1|1|L5|G|2026
6XA1|1|L5|A|2027
6XA1|1|L5|A|2028
6XA1|1|L5|A|2029
6XA1|1|L5|A|2030
6XA1|1|L5|U|2031
6XA1|1|L5|G|2032
6XA1|1|L5|G|2033
6XA1|1|L5|A|2034
6XA1|1|L5|U|2035
6XA1|1|L5|G|2036
6XA1|1|L5|G|2037
6XA1|1|L5|C|2038
6XA1|1|L5|G|2039
6XA1|1|L5|C|2040
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LB
- 60S ribosomal protein L3
- Chain LI
- 60S ribosomal protein L10-like
- Chain LO
- 60S ribosomal protein L13a
- Chain Lf
- 60S ribosomal protein L35a
- Chain Lm
- 60S ribosomal protein L40
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