IL_6XA1_094

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6XA1|1|L5|U|2867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_094 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0989

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6XA1|1|L5|C|2854
6XA1|1|L5|G|2855
6XA1|1|L5|U|2856
6XA1|1|L5|A|2857
6XA1|1|L5|A|2858
6XA1|1|L5|C|2859
*
6XA1|1|L5|G|2864
6XA1|1|L5|G|2865
6XA1|1|L5|A|2866
6XA1|1|L5|U|2867
6XA1|1|L5|A|2868
6XA1|1|L5|A|2869
6XA1|1|L5|G|2870

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA