IL_6XA1_098

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(OMG)G*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_098 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.0844

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6XA1|1|L5|G|3605
6XA1|1|L5|OMG|3606
6XA1|1|L5|G|3607
*
6XA1|1|L5|C|3812
6XA1|1|L5|C|3813
6XA1|1|L5|C|3814

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LV

60S ribosomal protein L23

Chain S2

Small subunit ribosomal RNA; SSU rRNA