IL_6XA1_101

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6XA1|1|L5|A|3642, 6XA1|1|L5|U|3658, 6XA1|1|L5|C|3662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_101 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0604

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6XA1|1|L5|C|3639
6XA1|1|L5|G|3640
6XA1|1|L5|A|3641
6XA1|1|L5|A|3642
6XA1|1|L5|G|3643
6XA1|1|L5|G|3644
*
6XA1|1|L5|U|3656
6XA1|1|L5|G|3657
6XA1|1|L5|U|3658
6XA1|1|L5|U|3659
6XA1|1|L5|G|3660
6XA1|1|L5|A|3661
6XA1|1|L5|C|3662
6XA1|1|L5|G|3663

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA