IL_6XA1_150

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

6XA1|1|L5|A|4678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_150 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2166

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6XA1|1|L5|G|4650
6XA1|1|L5|A|4651
6XA1|1|L5|U|4652
6XA1|1|L5|U|4653
6XA1|1|L5|A|4654
6XA1|1|L5|U|4655
*
6XA1|1|L5|A|4675
6XA1|1|L5|G|4676
6XA1|1|L5|A|4677
6XA1|1|L5|A|4678
6XA1|1|L5|U|4679
6XA1|1|L5|C|4680

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

60S ribosomal protein L40