IL_6XA1_152

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_152 not in the Motif Atlas

Geometric match to IL_5J7L_283

Geometric discrepancy: 0.2298

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6XA1|1|L5|G|4712
6XA1|1|L5|A|4713
6XA1|1|L5|G|4714
6XA1|1|L5|C|4715
*
6XA1|1|L5|G|4919
6XA1|1|L5|A|4920
6XA1|1|L5|A|4921
6XA1|1|L5|C|4922

Current chains

Chain L5

28S rRNA

Nearby chains