IL_6XA1_158

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

6XA1|1|L5|C|4865

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_158 not in the Motif Atlas

Geometric match to IL_5TBW_069

Geometric discrepancy: 0.2814

The information below is about IL_5TBW_069

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

6XA1|1|L5|G|4864
6XA1|1|L5|C|4865
6XA1|1|L5|G|4866
*
6XA1|1|L5|C|4885
6XA1|1|L5|C|4886

Current chains

Chain L5

28S rRNA

Nearby chains