IL_6XA1_202

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AG(OMG)GCAAG*CU

Length

10 nucleotides

Bulged bases

6XA1|1|S2|G|600

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_202 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1049

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

6XA1|1|S2|A|599
6XA1|1|S2|G|600
6XA1|1|S2|OMG|601
6XA1|1|S2|G|602
6XA1|1|S2|C|603
6XA1|1|S2|A|604
6XA1|1|S2|A|605
6XA1|1|S2|G|606
*
6XA1|1|S2|C|636
6XA1|1|S2|U|637

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SJ

40S ribosomal protein S9

Chain Se

40S ribosomal protein S30