IL_6XA1_227
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAGUA(PSU)G*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XA1_227 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.166
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6XA1|1|S2|G|1168
6XA1|1|S2|G|1169
6XA1|1|S2|A|1170
6XA1|1|S2|G|1171
6XA1|1|S2|U|1172
6XA1|1|S2|A|1173
6XA1|1|S2|PSU|1174
6XA1|1|S2|G|1175
*
6XA1|1|S2|U|1186
6XA1|1|S2|G|1187
6XA1|1|S2|A|1188
6XA1|1|S2|A|1189
6XA1|1|S2|A|1190
6XA1|1|S2|C|1191
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain Ln
- 60S ribosomal protein L41
- Chain SX
- 40S ribosomal protein S23
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