IL_6XA1_232

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAG*U(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_232 not in the Motif Atlas

Geometric match to IL_5UNE_004

Geometric discrepancy: 0.2642

The information below is about IL_5UNE_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6XA1|1|S2|G|1222
6XA1|1|S2|A|1223
6XA1|1|S2|G|1224
*
6XA1|1|S2|U|1642
6XA1|1|S2|PSU|1643
6XA1|1|S2|C|1644

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Bv

Transfer RNA; tRNA

Chain SF

40S ribosomal protein S5

Chain SQ

40S ribosomal protein S16