IL_6XA1_233
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CC(PSU)G*CGCG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XA1_233 not in the Motif Atlas
- Geometric match to IL_3WBM_002
- Geometric discrepancy: 0.278
- The information below is about IL_3WBM_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6XA1|1|S2|C|1230
6XA1|1|S2|C|1231
6XA1|1|S2|PSU|1232
6XA1|1|S2|G|1233
*
6XA1|1|S2|C|1525
6XA1|1|S2|G|1526
6XA1|1|S2|C|1527
6XA1|1|S2|G|1528
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain Bv
- Transfer RNA; tRNA
- Chain SQ
- 40S ribosomal protein S16
- Chain SS
- 40S ribosomal protein S18
- Chain ST
- 40S ribosomal protein S19
Coloring options: