IL_6XA1_268

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAC*GGUCG

Length

9 nucleotides

Bulged bases

6XA1|1|L5|C|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_268 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2051

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6XA1|1|L5|C|1080
6XA1|1|L5|G|1081
6XA1|1|L5|A|1082
6XA1|1|L5|C|1083
*
6XA1|1|L5|G|1186
6XA1|1|L5|G|1187
6XA1|1|L5|U|1188
6XA1|1|L5|C|1189
6XA1|1|L5|G|1190

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain LT

60S ribosomal protein L21