IL_6XA1_286

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AA(PSU)GAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_286 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.2591

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6XA1|1|L5|PSU|3694
6XA1|1|L5|C|3695
6XA1|1|L5|A|3696
6XA1|1|L5|A2M|3697
6XA1|1|L5|A|3698
6XA1|1|L5|G|3699
6XA1|1|L5|U|3700
*
6XA1|1|L5|A|3711
6XA1|1|L5|A|3712
6XA1|1|L5|PSU|3713
6XA1|1|L5|G|3714
6XA1|1|L5|A|3715
6XA1|1|L5|A|3716
6XA1|1|L5|G|3717

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36