IL_6XA1_287

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

6XA1|1|L5|A2M|3764, 6XA1|1|L5|C|3770, 6XA1|1|L5|C|3789

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_287 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1121

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6XA1|1|L5|C|3760
6XA1|1|L5|5MC|3761
6XA1|1|L5|A|3762
6XA1|1|L5|A|3763
6XA1|1|L5|A2M|3764
6XA1|1|L5|U|3765
6XA1|1|L5|G|3766
6XA1|1|L5|C|3767
6XA1|1|L5|C|3768
6XA1|1|L5|U|3769
6XA1|1|L5|C|3770
6XA1|1|L5|OMG|3771
*
6XA1|1|L5|OMC|3787
6XA1|1|L5|G|3788
6XA1|1|L5|C|3789
6XA1|1|L5|G|3790

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain j

Eukaryotic peptide chain release factor subunit 1