IL_6XA1_294

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(OMC)(PSU)C*G(PSU)G(A2M)G

Length

8 nucleotides

Bulged bases

6XA1|1|L5|G|4492, 6XA1|1|L5|A2M|4493

QA status

Modified nucleotides: OMC, PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_294 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.3214

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6XA1|1|L5|OMC|4426
6XA1|1|L5|PSU|4427
6XA1|1|L5|C|4428
*
6XA1|1|L5|G|4490
6XA1|1|L5|PSU|4491
6XA1|1|L5|G|4492
6XA1|1|L5|A2M|4493
6XA1|1|L5|G|4494

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23

Chain NC

Stalled Nascent chain

Chain j

Eukaryotic peptide chain release factor subunit 1