IL_6XA1_299

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_299 not in the Motif Atlas

Geometric match to IL_7ECO_006

Geometric discrepancy: 0.1614

The information below is about IL_7ECO_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6XA1|1|L5|G|4862
6XA1|1|L5|G|4863
6XA1|1|L5|G|4864
*
6XA1|1|L5|C|4886
6XA1|1|L5|C|4887
6XA1|1|L5|C|4888

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14