IL_6XA1_301

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCA*(PSU)A(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_301 not in the Motif Atlas

Geometric match to IL_5UNE_006

Geometric discrepancy: 0.3897

The information below is about IL_5UNE_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_38565.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

12

Unit IDs

6XA1|1|S2|G|23
6XA1|1|S2|C|24
6XA1|1|S2|A|25
*
6XA1|1|S2|PSU|649
6XA1|1|S2|A|650
6XA1|1|S2|PSU|651

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23