IL_6XDR_174

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

6XDR|1|a|U|2689, 6XDR|1|a|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XDR_174 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.078

The information below is about IL_5J7L_348

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6XDR|1|a|U|2687
6XDR|1|a|G|2688
6XDR|1|a|U|2689
6XDR|1|a|U|2690
6XDR|1|a|C|2691
*
6XDR|1|a|G|2718
6XDR|1|a|G|2719
6XDR|1|a|U|2720
6XDR|1|a|A|2721
6XDR|1|a|G|2722

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain w

50S ribosomal protein L17

Chain y

50S ribosomal protein L19