IL_6XE0_026

3D structure

PDB id

6XE0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6XE0|1|W|A|572

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XE0_026 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.256

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

6XE0|1|W|C|569
6XE0|1|W|G|570
6XE0|1|W|U|571
6XE0|1|W|A|572
6XE0|1|W|A|573
6XE0|1|W|A|574
6XE0|1|W|G|575
*
6XE0|1|W|C|880
6XE0|1|W|G|881

Current chains

Chain W

16s rRNA

Nearby chains

Chain K

30S ribosomal protein S12

Chain Q

30S ribosomal protein S17