IL_6XE0_068
3D structure
- PDB id
- 6XE0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- AGAAU*GGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XE0_068 not in the Motif Atlas
- Homologous match to IL_4LFB_065
- Geometric discrepancy: 0.1144
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.1
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
6XE0|1|W|A|673
6XE0|1|W|G|674
6XE0|1|W|A|675
6XE0|1|W|A|676
6XE0|1|W|U|677
*
6XE0|1|W|G|713
6XE0|1|W|G|714
6XE0|1|W|A|715
6XE0|1|W|A|716
6XE0|1|W|U|717
Current chains
- Chain W
- 16s rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S6
- Chain J
- 30S ribosomal protein S11
- Chain R
- 30S ribosomal protein S18
- Chain U
- 30S ribosomal protein S21
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