IL_6XHY_243

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

6XHY|1|2A|A|1938, 6XHY|1|2A|U|1944, 6XHY|1|2A|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHY_243 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1219

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

6XHY|1|2A|C|1934
6XHY|1|2A|G|1935
6XHY|1|2A|A|1936
6XHY|1|2A|A|1937
6XHY|1|2A|A|1938
6XHY|1|2A|5MU|1939
6XHY|1|2A|U|1940
6XHY|1|2A|C|1941
6XHY|1|2A|5MC|1942
6XHY|1|2A|U|1943
6XHY|1|2A|U|1944
6XHY|1|2A|G|1945
*
6XHY|1|2A|C|1961
6XHY|1|2A|5MC|1962
6XHY|1|2A|U|1963
6XHY|1|2A|G|1964

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2w

Transfer RNA; tRNA

Chain 2x

Transfer RNA; tRNA