IL_6XHY_253

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGUGAACC*GGGGAG

Length

15 nucleotides

Bulged bases

6XHY|1|2A|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHY_253 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.5849

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

6XHY|1|2A|C|2129
6XHY|1|2A|U|2130
6XHY|1|2A|G|2131
6XHY|1|2A|U|2132
6XHY|1|2A|G|2133
6XHY|1|2A|A|2134
6XHY|1|2A|A|2135
6XHY|1|2A|C|2136
6XHY|1|2A|C|2137
*
6XHY|1|2A|G|2154
6XHY|1|2A|G|2155
6XHY|1|2A|G|2156
6XHY|1|2A|G|2157
6XHY|1|2A|A|2158
6XHY|1|2A|G|2159

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains