IL_6XII_020

3D structure

PDB id

6XII (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XII_020 not in the Motif Atlas

Geometric match to IL_6CZR_359

Geometric discrepancy: 0.2155

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6XII|1|D|U|409
6XII|1|D|G|410
6XII|1|D|A|411
6XII|1|D|A|412
6XII|1|D|G|413
6XII|1|D|A|414
6XII|1|D|A|415
6XII|1|D|G|416
*
6XII|1|D|U|427
6XII|1|D|G|428
6XII|1|D|U|429
6XII|1|D|A|430
6XII|1|D|A|431
6XII|1|D|A|432
6XII|1|D|G|433

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4