IL_6XII_198

3D structure

PDB id

6XII (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XII_198 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0595

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6XII|1|a|U|1851
6XII|1|a|U|1852
6XII|1|a|A|1853
6XII|1|a|A|1854
6XII|1|a|U|1855
6XII|1|a|U|1856
6XII|1|a|G|1857
6XII|1|a|A|1858
6XII|1|a|U|1859
6XII|1|a|G|1860
*
6XII|1|a|U|1882
6XII|1|a|U|1883
6XII|1|a|G|1884
6XII|1|a|A|1885
6XII|1|a|U|1886
6XII|1|a|C|1887
6XII|1|a|G|1888
6XII|1|a|A|1889
6XII|1|a|A|1890
6XII|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA