IL_6XIJ_171
3D structure
- PDB id
- 6XIJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 6XIJ|1|a|G|2780
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIJ_171 not in the Motif Atlas
- Homologous match to IL_5J7L_345
- Geometric discrepancy: 0.0682
- The information below is about IL_5J7L_345
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6XIJ|1|a|C|2636
6XIJ|1|a|U|2637
6XIJ|1|a|G|2638
6XIJ|1|a|A|2639
6XIJ|1|a|G|2640
*
6XIJ|1|a|C|2774
6XIJ|1|a|G|2775
6XIJ|1|a|A|2776
6XIJ|1|a|G|2777
6XIJ|1|a|A|2778
6XIJ|1|a|U|2779
6XIJ|1|a|G|2780
6XIJ|1|a|A|2781
6XIJ|1|a|G|2782
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain j
- 50S ribosomal protein L3
- Chain s
- 50S ribosomal protein L13
Coloring options: