IL_6XIQ_036
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAUUA*UUCUC
- Length
- 10 nucleotides
- Bulged bases
- 6XIQ|1|1|U|1044
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIQ_036 not in the Motif Atlas
- Homologous match to IL_8C3A_044
- Geometric discrepancy: 0.5899
- The information below is about IL_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
6XIQ|1|1|G|1005
6XIQ|1|1|A|1006
6XIQ|1|1|U|1007
6XIQ|1|1|U|1008
6XIQ|1|1|A|1009
*
6XIQ|1|1|U|1041
6XIQ|1|1|U|1042
6XIQ|1|1|C|1043
6XIQ|1|1|U|1044
6XIQ|1|1|C|1045
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain AZ
- Transfer RNA; tRNA
- Chain D
- RPL5 isoform 1
- Chain I
- RPL10 isoform 1
Coloring options: