IL_6XIQ_039

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUUG*CGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_039 not in the Motif Atlas

Geometric match to IL_4XW0_002

Geometric discrepancy: 0.3811

The information below is about IL_4XW0_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6XIQ|1|1|C|1069
6XIQ|1|1|U|1070
6XIQ|1|1|U|1071
6XIQ|1|1|G|1072
*
6XIQ|1|1|C|1086
6XIQ|1|1|G|1087
6XIQ|1|1|U|1088
6XIQ|1|1|G|1089

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein L21-A

Chain b

RPL29 isoform 1