IL_6XIQ_061
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAUA*UGC
- Length
- 7 nucleotides
- Bulged bases
- 6XIQ|1|1|A|1619
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIQ_061 not in the Motif Atlas
- Geometric match to IL_5B2P_002
- Geometric discrepancy: 0.3703
- The information below is about IL_5B2P_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 78
Unit IDs
6XIQ|1|1|G|1618
6XIQ|1|1|A|1619
6XIQ|1|1|U|1620
6XIQ|1|1|A|1621
*
6XIQ|1|1|U|1824
6XIQ|1|1|G|1825
6XIQ|1|1|C|1826
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain g
- 60S ribosomal protein L34-A
- Chain k
- RPL38 isoform 1
Coloring options: