IL_6XIQ_065

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_065 not in the Motif Atlas

Geometric match to IL_6WBR_001

Geometric discrepancy: 0.3407

The information below is about IL_6WBR_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6XIQ|1|1|G|1661
6XIQ|1|1|G|1662
6XIQ|1|1|C|1663
*
6XIQ|1|1|G|1786
6XIQ|1|1|A|1787
6XIQ|1|1|C|1788

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain g

60S ribosomal protein L34-A

Chain p

60S ribosomal protein L43-A