IL_6XIQ_089

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

6XIQ|1|1|A|2808, 6XIQ|1|1|C|2809

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_089 not in the Motif Atlas

Geometric match to IL_6JXM_001

Geometric discrepancy: 0.254

The information below is about IL_6JXM_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

6XIQ|1|1|G|2412
6XIQ|1|1|A|2413
*
6XIQ|1|1|U|2807
6XIQ|1|1|A|2808
6XIQ|1|1|C|2809
6XIQ|1|1|C|2810

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A