IL_6XIQ_122
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AGUCA*UAUU
- Length
- 9 nucleotides
- Bulged bases
- 6XIQ|1|2|C|25
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIQ_122 not in the Motif Atlas
- Geometric match to IL_4K27_001
- Geometric discrepancy: 0.3529
- The information below is about IL_4K27_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6XIQ|1|2|A|22
6XIQ|1|2|G|23
6XIQ|1|2|U|24
6XIQ|1|2|C|25
6XIQ|1|2|A|26
*
6XIQ|1|2|U|600
6XIQ|1|2|A|601
6XIQ|1|2|U|602
6XIQ|1|2|U|603
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AN
- 40S ribosomal protein S23-A
- Chain z
- 40S ribosomal protein S9-A
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