IL_6XIQ_124

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

6XIQ|1|2|A|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_124 not in the Motif Atlas

Geometric match to IL_7A0S_087

Geometric discrepancy: 0.3158

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6XIQ|1|2|U|37
6XIQ|1|2|C|38
6XIQ|1|2|A|39
6XIQ|1|2|A|40
6XIQ|1|2|A|41
*
6XIQ|1|2|U|466
6XIQ|1|2|G|467
6XIQ|1|2|A|468
6XIQ|1|2|C|469
6XIQ|1|2|A|470
6XIQ|1|2|A|471

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AO

40S ribosomal protein S24-A

Chain u

40S ribosomal protein S4-A

Chain z

40S ribosomal protein S9-A