IL_6XIQ_130

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6XIQ|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_130 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.4653

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6XIQ|1|2|G|143
6XIQ|1|2|U|144
6XIQ|1|2|A|145
6XIQ|1|2|U|146
6XIQ|1|2|A|147
6XIQ|1|2|A|148
6XIQ|1|2|C|149
*
6XIQ|1|2|G|165
6XIQ|1|2|C|166
6XIQ|1|2|U|167
6XIQ|1|2|A|168
6XIQ|1|2|A|169
6XIQ|1|2|U|170
6XIQ|1|2|A|171
6XIQ|1|2|C|172

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AO

40S ribosomal protein S24-A

Chain w

40S ribosomal protein S6-A