IL_6XIQ_137

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCC*GUGC

Length

7 nucleotides

Bulged bases

6XIQ|1|2|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_137 not in the Motif Atlas

Geometric match to IL_4P3U_001

Geometric discrepancy: 0.3493

The information below is about IL_4P3U_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6XIQ|1|2|G|274
6XIQ|1|2|C|275
6XIQ|1|2|C|276
*
6XIQ|1|2|G|279
6XIQ|1|2|U|280
6XIQ|1|2|G|281
6XIQ|1|2|C|282

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain w

40S ribosomal protein S6-A